Question is what type of product are you using for this. Or what Company etc. Dupont, House Of Kolor. If you want a quality job, you want to fill these scratches witha filling primer. Not a primer surfacer. If you do this it will fill all that needs to be filled. You must apply a guide coat after you apply this primer, and it has dried. By doing this you can tell how far you need to sand, once you see no more guide coat, then it is time to stop sanding. You can use filler as stated. If you can spare the expense of a filling primer then thats the way to go. By using "BONDO" or other fillers you waste time as well as money in most cases.